Photosynthetica 2008, 46(4):525-530 | DOI: 10.1007/s11099-008-0089-6
Isolation and characterization of photosystem 2 PsbR gene and its promoter from drought-tolerant plant Prosopis juliflora
- 1 Department of Plant Molecular Biology, M.S. Swaminathan Research Foundation, Institutional Area, Taramani, Chennai, India
Prosopis juliflora is a hardy plant tolerant to drought, salinity, extremes of soil pH, and heavy metal stress. We isolated and characterized a photosystem 2 (PS2) gene PsbR (Pj PsbR) and its promoter. Northern analysis for Pj PsbR in P. juliflora leaves under 25 % polyethylene glycol stress showed steady decrease in transcript level at 12, 24, and 48 h after stress application. Under 90 mM H2O2 stress, transcript level dropped drastically at 12 h, but increased again compared to the control at 24 h. A 1.7 kb fragment upstream the 5' UTR of this gene (putative promoter) was isolated and analyzed in silico. Several putative cis-acting DNA elements were identified in this sequence.
Additional key words: H2O2; Northern analysis; photosystem 2; polyethylene glycol; proteins; transcript level; water deficit
Received: February 20, 2008; Accepted: July 29, 2008; Published: December 1, 2008 Show citation
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References
- Bauer, M.A., Anderson, J.B., Derbyshire, M.K., DeWeese-Scott, C., Gonzales, N.R., Gwadz, M., Hao, L., He, S., Hurwitz., D.I., Jackson, J.D., Ke, Z., Krylov, D., Lanczycki, C.J., Liebert, C.A., Liu, C., Lu, F., Lu, S., Marchler, G.H., Mullokandov, M., Song, J.S., Thanki, N., Yamashita, R.A., Yin, J.J., Zhang, D., Bryant, S.H.: CDD: a conserved domain database for interactive domain family analysis.-Nucl. Acids Res. 35: 237-240, 2007.
Go to original source... - Burkart, A., Simpson, B.B.: The genus Prosopis and annoted key to the species of the world.-In: Simpson, B.B. (ed.): Mesquite: Its Biology in Two Desert Ecosystems. Pp. 201-215. Dowden, Hutchinson and Ross, Stroudsburg 1977.
- Burke, T.W., Kadonaga, J.T.: Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters.-Genes Devel. 10: 711-724, 1996.
Go to original source... - Chakir, S., Jensen, M.: How does Lobaria pulmoria regulate photosystem II during progressive desiccation and osmotic water stress? A chlorophyll fluorescence study at room temperature and at 77 K.-Physiol. Plant. 105: 257-265, 1999.
Go to original source... - Chomczynski, P., Sacchi, N.: Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.-Anal. Biochem. 162: 156-159, 1987.
Go to original source... - Collett, H., Butowt, R., Smith, J., Farrant, J., Illing, N.: Photosynthetic genes are differentially transcribed during the dehydration-rehydration cycle in the resurrection plant, Xerophyta humilis.-J. exp. Bot. 54: 2593-2595, 2003.
Go to original source... - Cornic, G.: Drought stress and high light effects on leaf photosynthesis.-In: Baker, N.R., Bowyer, J.R. (ed.): Photoinhibition of Photosynthesis: From Molecular Mechanisms to the Field. Pp. 297-313. Bios Scientific Publ., Oxford 1994.
- De Las Rivas, J., Heredia, P., Roman, A.: Oxygen-evolving extrinsic proteins (PsbO,P,Q,R): bioinformatic and functional analysis.-Biochim. biophys. Acta 1767: 575-582, 2007.
Go to original source... - Drake, H.: Trees for Dry Lands.-International Scientific Publ., New York 1993.
- Emanuelsson, O., Nielsen, H., Brunak, S., von Heijne, G.: Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.-J. mol. Biol. 300: 1005-1016, 2000.
Go to original source... - Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S., Wilkins, M.R., Appel, R.D., Bairoch, A.: Protein identification and analysis tools on the ExPASy serve.-In: John, M.W. (ed.): The Proteomics Protocols Handbook. Pp. 571-607. Humana Press, Totowa 2005.
Go to original source... - Gilmartin, P.M., Sarokin, L., Memelink, J., Chua, N.-H.: Molecular light switches for plant genes.-Plant Cell 2: 369-378, 1990.
Go to original source... - Higo, K., Ugawa, Y., Iwamoto, M., Korenaga, T.: Plant cis-acting regulatory DNA elements (PLACE) database.-Nucl. Acids Res. 27: 97-300, 1999.
Go to original source... - Kapoor, S., Sugiura, M.: Identification of two essential sequence elements in the nonconsensus type II PatpB-290 plastid promoter by using plastid transcription extracts from cultured tobacco BY-2 cells.-Plant Cell 11: 1799-1810, 1999.
Go to original source... - Lagrange, T., Kapanidis, A.N., Tang, H., Reinberg, D., Ebright, R.H.: New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB.-Genes Devel. 12: 34-44, 1998.
Go to original source... - Lautner, A., Klein, R., Ljungberg, U., Reilander, H., Bartling, D., Andersson, B., Reinke, H., Beyreuther, K., Herrmann, R.G.: Nucleotide sequence of cDNA clones encoding the complete precursor for the "10-kDa" polypeptide of photosystem II from spinach.-J. biol. Chem. 263: 10077-10081, 1988.
Go to original source... - Liu, Y.G., Mitsukawa, N., Oosumi, T., Whittier, R.F.: Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.-Plant J. 8: 457-463, 1995.
Go to original source... - Ljungberg, U., Åkerlund, H.-E., Andersson, B.: The release of a 10-kDa polypeptide from everted photosystem II thylakoid membranes by alkaline Tris.-FEBS Lett. 175: 255-258, 1984.
Go to original source... - Ljungberg, U., Åkerlund, H.-E., Andersson, B.: Isolation and characterization of the 10-kDa and 22-kDa polypeptides of higher plant photosystem 2.-Eur. J. Biochem. 158: 477-482, 1986.
Go to original source... - Lu, C.M., Zhang, J.H.: Effects of water stress on photosystem II photochemistry and its thermostability in wheat plants.-J. exp. Bot. 50: 1199-1206, 1999.
Go to original source... - Mehta, P.A., Sivaprakash, K., Parani, M., Venkataraman, G., Parida, A.K.: Generation and analysis of expressed sequence tags from the salt-tolerant mangrove species Avicennia marina (Forsk) Vierh.-Theor. appl. Genet. 110: 416-424, 2005.
Go to original source... - Mishra, R.K., Ghanotakis, D.F.: Selective extraction of 22 kDa and 10 kDa polypeptides from Photosystem II without removal of 23 kDa and 17 kDa extrinsic proteins.-Photosynth. Res. 36: 11-16, 1993.
Go to original source... - Murashige, T., Skoog, F.: A revised method for rapid growth and bioassays with tobacco tissue cultures.-Physiol. Plant. 15: 473-497, 1962.
Go to original source... - Nakamura, M., Tsunoda, T., Yoshitsugul, T., Obokata, J.: Core promoter diversity and photosynthesis gene regulation.-Endocytobiosis Cell Res. 15: 300-308, 2004.
- Nielsen, H., Jacob, E., Soren, B., von Heijne, G.: Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.-Protein Eng. 10: 1-6, 1997.
Go to original source... - Roeder, R.G.: Role of general and gene-specific cofactors in the regulation of eukaryotic transcription.-Cold Spring Harb. Symp. quant. Biol. 58: 201-218, 1998.
Go to original source... - Senthil Kumar, P., Prince, W.S., Sivakumar, S., Subbhuraam, C.V.: Prosopis juliflora - a green solution to decontaminate heavy metal (Cu and Cd) contaminated soils.-Chemosphere 60: 1493-1496, 2005.
Go to original source... - Shi, L.X., Schroder, W.P.: The low molecular mass subunits of the photosynthetic supracomplex, photosystem II.-Biochim. biophys. Acta 1608: 75-96, 2004.
Go to original source... - Shirke, P.A., Pathre, U.V.: Influence of leaf-to-air vapour pressure deficit (VPD) on the biochemistry and physiology of photosynthesis in Prosopis juliflora.-J. exp. Bot. 55: 2111-2120, 2004.
Go to original source... - Sinha, S., Rai, U.N., Bhatt, K., Pandey, K., Gupta, A.K.: Fly-ash-induced oxidative stress and tolerance in Prosopis juliflora L. grown on different amended substrates.-Environ. Monit. Assess. 102: 447-457, 2005.
Go to original source... - Skotnica, J., Matou¹ková, M., Nau¹, J., Lazar, D., Dvorak, L.: Thermo luminescence and fluorescence study of changes in Photosystem II photochemistry in desiccating barley leaves.-Photosynth. Res. 65: 29-40, 2000.
Go to original source... - Smale, S.T., Baltimore, D.: The "initiator" as a transcription control element.-Cell 57: 103-113, 1989.
Go to original source... - Suja, G., Gayatri, V., Parida, A.: Identification of stress-induced genes from the drought-tolerant plant Prosopis juliflora (Swartz) DC. through analysis of expressed sequence tags.-Genome 50: 470-478, 2007.
Go to original source... - Suorsa, M., Sirpio, S., Allahverdiyeva, Y., Paakkarinen, V., Mamedov, F., Styring, S., Aro, E.-M.: PsbR, a missing link in the assembly of the oxygen-evolving complex of plant photosystem II.-J. biol. Chem. 281: 145-150, 2006.
Go to original source... - Thum, K.E., Kim, M., Morishige, D.T., Eibl, C., Koop, H.U., Mullet, J.E.: Analysis of barley chloroplast psbD light-responsive promoter elements in transplastomic tobacco.-Plant mol. Biol. 47: 353-366, 2001.
Go to original source... - Tusnády, G.E., Simon, I.: Principles governing amino acid composition of integral membrane proteins: application to topology prediction.-J. mol. Biol. 283: 489-506, 1998.
Go to original source... - Tusnády, G.E., Simon, I.: The HMMTOP transmembrane topology prediction server.-Bioinformatics 17: 849-850, 2001.
Go to original source... - Villain, P., Mache, R., Zhou, D.X.: The mechanism of GT element-mediated cell type-specific transcriptional control.-J. biol. Chem. 271: 32593-32598, 1996.
Go to original source... - Webber, A.N., Packman, L.C., Gray, J.C.: A 10 kDa polypeptide associated with the oxygen-evolving complex of photosystem II has a putative C-terminal non-cleavable thylakoid transfer domain.-FEBS Lett. 242: 435-438, 1989.
Go to original source... - Yordanov, I., Velikova, V., Tsonev, T.: Plant responses to drought, acclimation, and stress tolerance.-Photosynthetica 38: 171-186, 2000.
Go to original source... - Zhou, J., Wang, W.F., Jiao, Y.L., Qin, Y.H., Liu, X.G., He, K., Chen, C., Ma, L.G., Wang, J., Xiong, L.Z., Zhang, Q.F., Fan, L.M., Deng, X.W.: Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle.-Plant mol. Biol. 63: 591-608, 2006.
Go to original source...




